The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0058
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 252238
End posion on genome 252314
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ccgcttccga
tRNA gene sequence 
GGGCTGATAGTATAGACTGGTAGTATACCCGCCTTGCACGCGGGGGGTCGGGGGTTCAAA
TCCCCCTCAGTCCACCA
Downstream region at tRNA end position 
ttgcatcttt
Secondary structure (Cloverleaf model)
>At0058	Ala	TGC
                   a      ACCA ttgcatcttt
                     G - C
                     G - C
                     G + T
                     C - G
                     T - A
                     G - C
                     A - T          T A
                    T     C C C C C     A
      A G A        A      | | | | |     A
    C       T A T G       G G G G G     C
    T       + | | +                 T T
    G       G T A T
      G T A        A     GGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTGATAGTATAGACTGGTAGTATACCCGCCTTGCACGCGGGGGGTCGGGGGTTCAAA
TCCCCCTCAGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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