The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0066
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1207261
End posion on genome 1207383
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
cacggatcgt
tRNA gene sequence 
CCCAAGCTAGCTCAGCCTGGTAGAGCTTCCGGCTGTAGACCGGGTTGTCGAAGGTTCAAT
TCCTTCGCTTGGGACCA
Downstream region at tRNA end position 
cataaaactg
Secondary structure (Cloverleaf model)
>At0066	Tyr	GTA
                   t      ACCA cataaaactg
                     C - G
                     C - G
                     C - G
                     A - T
                     A - T
                     G - C
                     C - G          T T
                    T     C T T C C     A
      C G A        A      | | | | |     A
    C       C T C G       G A A G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        T     TTGTC
                    T + G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCAAGCTAGCTCAGCCTGGTAGAGCTTCCGGCTGTAGatgtcggccttggctgaccgta
taacagcatatcaggcatacagagACCGGGTTGTCGAAGGTTCAATTCCTTCGCTTGGGA
CCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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