The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0075
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 21853
End posion on genome 21779
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
taccaccgcg
tRNA gene sequence 
GGGCCGGTGGTTTAGGGGTATAATGCTGCGTTCGCAACGCAGAAGTCGGGGGTTCAATTC
CCTCCCGGTCCACCA
Downstream region at tRNA end position 
ctatacaggc
Secondary structure (Cloverleaf model)
>At0075	Ala	CGC
                   g      ACCA ctatacaggc
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T T
                    T     C T C C C     A
        G A        G      | + | | |     A
      G     T T T G       G G G G G     C
      G       | | +                 T T
      G     T A A T
        T A        G     AAGTC
                    C - G
                    T - A
                    G - C
                    C - G
                    G - C
                  T       A
                  T       A
                    C G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTGGTTTAGGGGTATAATGCTGCGTTCGCAACGCAGAAGTCGGGGGTTCAATTC
CCTCCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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