The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0081
Genome IDDP000238
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCenarchaeum symbiosum [DP000238]
Start position on genome 1160652
End posion on genome 1160579
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
gcgtgctcgg
tRNA gene sequence 
GCAGTCATAGTATAGTTTGGTTATTATTCCAGCTTGCCAAGTTGGTGACCCGGGTCCAAA
TCCCGGTGACTGCAtta
Downstream region at tRNA end position 
aacaccccag
Secondary structure (Cloverleaf model)
>At0081	Gly	GCC
                   g      Atta aacaccccag
                     G - C
                     C - G
                     A - T
                     G - C
                     T - A
                     C - G
                     A - T          T A
                    T     G G C C C     A
    T T G A        A      | | | | |     A
  T         T A T G       C C G G G     C
  G           | | +                 T C
  G         T T A T
    T T A          T     TGAC
                    C - G
                    C - G
                    A - T
                    G + T
                    C - G
                  T       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGTCATAGTATAGTTTGGTTATTATTCCAGCTTGCCAAGTTGGTGACCCGGGTCCAAA
TCCCGGTGACTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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