The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0104
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 510916
End posion on genome 510990
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
ctgtaatggt
tRNA gene sequence 
GCCGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGTCCGGGGTTCGAATC
CCCGCGGCGGCACCA
Downstream region at tRNA end position 
gccccattct
Secondary structure (Cloverleaf model)
>At0104	Phe	GAA
                   t      ACCA gccccattct
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
        G A        A      | | | | |     G
      C     C T C G       C G G G G     C
      G     | | | |                 T T
      G     G A G C
        G A        G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGTCCGGGGTTCGAATC
CCCGCGGCGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK