The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0115
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 1593236
End posion on genome 1593323
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
agccctgggc
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGTCCAAGGGGCCGGCCTGGAGAGCCGGTGGCCGACAAGGCCGC
GCGGGTTCAAATCCCGCCCCCGGCGCCA
Downstream region at tRNA end position 
tactactcct
Secondary structure (Cloverleaf model)
>At0115	Ser	GGA
                   c      GCCA tactactcct
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    T       A G G G
      C C A        G     TGGCCGACAAGGCCGC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGTCCAAGGGGCCGGCCTGGAGAGCCGGTGGCCGACAAGGCCGC
GCGGGTTCAAATCCCGCCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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