The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0123
Genome IDCP000493
Search identical group
Phylum/ClassThermoproteota
SpeciesHyperthermus butylicus DSM 5456 [CP000493]
Start position on genome 48304
End posion on genome 48230
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
cggctactgt
tRNA gene sequence 
GCCGCCGTAGCTCAGCGGTAGAGCGCCGGCCTTGTAAGCCGGTGGTCGCGGGTTCGAATC
CCGCCGGCGGCTCCA
Downstream region at tRNA end position 
ctactcctcc
Secondary structure (Cloverleaf model)
>At0123	Thr	TGT
                   t      TCCA ctactcctcc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
        G A        A      | | | | |     G
      C     C T C G       G C G G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCGGTAGAGCGCCGGCCTTGTAAGCCGGTGGTCGCGGGTTCGAATC
CCGCCGGCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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