The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0150
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 684543
End posion on genome 684627
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
atcagtaagt
tRNA gene sequence 
GCGGGGGTGCCCGAGCTAGGCCAAAGGGGGTGGACTGAGGCTCCACTGGAGTAGTCCTGC
GCGGGTTCAAATCCCGCCCCCCGCAttc
Downstream region at tRNA end position 
cttaaaatag
Secondary structure (Cloverleaf model)
>At0150	Leu	GAG
                   t      Attc cttaaaatag
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    T C G A        G      | | | | |     A
  A         G C C C       G C G G G     C
  G           | | |                 T T
  G         A G G G
    C C A A        G     TGGAGTAGTCCTGC
                    G - C
                    T - A
                    G - C
                    G - C
                    A - T
                  C       C
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCTAGGCCAAAGGGGGTGGACTGAGGCTCCACTGGAGTAGTCCTGC
GCGGGTTCAAATCCCGCCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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