The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0161
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1960401
End posion on genome 1960497
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
cttagatatt
tRNA gene sequence 
GCCGGGATCGCCTAGCCTGGTTAGGGCGGCGGCCTGCTAAGCCGTTGGGGGAAACCCCGC
GTGGGTTCAAATCCCACTCCCGGCGcct
Downstream region at tRNA end position 
cattaccaac
Secondary structure (Cloverleaf model)
>At0161	Ser	GCT
                   t      Gcct cattaccaac
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     C A C C C     A
    C C G A        C      | | | | |     A
  T         T C C G       G T G G G     C
  G         + | | |                 T T
  G         G G G C
    T T A          G     TGGGGGAAACCCCGC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATCGCCTAGCCTGGTTAGGGCGGCGGCCTGCTAattagcgtgggcAGCCGTTGG
GGGAAACCCCGCGTGGGTTCAAATCCCACTCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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