The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0181
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 1961505
End posion on genome 1961421
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
taaatgttgt
tRNA gene sequence 
GCGGGGGTGCCCGAGCTAGGCCAAAGGGGGTAGGCTTAGGCCCTACTGGAGTAGTCCTGC
GCGGGTTCAAATCCCGCCCCCCGCAtgc
Downstream region at tRNA end position 
ctctcgcgtg
Secondary structure (Cloverleaf model)
>At0181	Leu	TAG
                   t      Atgc ctctcgcgtg
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    T C G A        G      | | | | |     A
  A         G C C C       G C G G G     C
  G           | | |                 T T
  G         A G G G
    C C A A        G     TGGAGTAGTCCTGC
                    G - C
                    T - A
                    A - T
                    G - C
                    G - C
                  C       C
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCTAGGCCAAAGGGGGTAGGCTTAGGCCCTACTGGAGTAGTCCTGC
GCGGGTTCAAATCCCGCCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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