The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0189
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2191299
End posion on genome 2191226
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
atcttatact
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGAAGAGTGCGCGGTTGGCATCCGCGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCActt
Downstream region at tRNA end position 
caccgttacg
Secondary structure (Cloverleaf model)
>At0189	Ala	GGC
                   t      Actt caccgttacg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | +                 T T
    G       G A G T
      G A A        G     AGGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  T       T
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGAAGAGTGCGCGGTTGGCATCCGCGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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