The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0202
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1740444
End posion on genome 1740534
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
cgcactctca
tRNA gene sequence 
GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCGGCCTTCCAAGCCGTTGATCCCGGGTTCA
AATCCCGGCCGCCGCAtgt
Downstream region at tRNA end position 
ccgccctttc
Secondary structure (Cloverleaf model)
>At0202	Gly	TCC
                   a      Atgt ccgccctttc
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T T A        G     TGATC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCGGCCTTCCAcgcggttgcgaagaaAGCCG
TTGATCCCGGGTTCAAATCCCGGCCGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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