The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0211
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 2020794
End posion on genome 2020881
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
tttaaagcag
tRNA gene sequence 
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Downstream region at tRNA end position 
cctcttcacc
Secondary structure (Cloverleaf model)
>At0211	Leu	TAG
                   g      ACCA cctcttcacc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCGTAGGCCTGC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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