The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0213
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 2039014
End posion on genome 2039108
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
tatagggcga
tRNA gene sequence 
GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCCGCCTCGTAAGCGGGAGGTCCCGGGTTCGA
ATCCCGGCCGGGGCTttt
Downstream region at tRNA end position 
gtccctcttg
Secondary structure (Cloverleaf model)
>At0213	Thr	CGT
                   a      Tttt gtccctcttg
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T C G          G     AGGTC
                    C - G
                    C - G
                   *C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCCaggggcaaagccccgcgtaaGCCTCGTAA
GCGGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK