The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0224
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1196357
End posion on genome 1196281
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
aataagggga
tRNA gene sequence 
GGGCCCGTGGCTCAGCCTGGTAGAGCGGCGGCCTTCGGAGCCGTAGGTCGTGGGTTCAAA
TCCCACCGGGCCCGCCA
Downstream region at tRNA end position 
ctatttttta
Secondary structure (Cloverleaf model)
>At0224	Arg	TCG
                   a      GCCA ctatttttta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    C       C T C G       G T G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTCAGCCTGGTAGAGCGGCGGCCTTCGGAGCCGTAGGTCGTGGGTTCAAA
TCCCACCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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