The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0265
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1479953
End posion on genome 1479841
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position
aaacacatga
tRNA gene sequence
GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCGGCCTGCCAAGCCGTTGATCCCGGGTTCA
AATCCCGGCCGCCGCACCA
Downstream region at tRNA end position
cgccggtctt
Secondary structure (Cloverleaf model)
>At0265	Gly	GCC
                   a      ACCA cgccggtctt
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T T A        G     TGATC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTAGTCTAGCCTGGTTTAaggaccccggagaaggatgaagggggccgactagGG
ATGGCGGCCTGCCAAGCCGTTGATCCCGGGTTCAAATCCCGGCCGCCGCACCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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