The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0290
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 579410
End posion on genome 579526
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
ataggcacag
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTTACACGCGGGTGATCCCGGGTTCGAATC
CCGGCGGGCCCACCA
Downstream region at tRNA end position 
cgcttatttt
Secondary structure (Cloverleaf model)
>At0290	Val	TAC
                   g      ACCA cgcttatttt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        T A        G     TGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTTACAtggcgcacccgcaacagccttaga
gCGCGGGTGATCCCGGGagggcgtaccccgggaaTTCGAATCCCGGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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