The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0291
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 829919
End posion on genome 830055
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
gggaagtgcg
tRNA gene sequence 
GCCCCGGTAGTCTAGCCCGGTCAAGGATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGGGGCACCA
Downstream region at tRNA end position 
cgtctttatc
Secondary structure (Cloverleaf model)
>At0291	Glu	CTC
                   g      ACCA cgtctttatc
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGTCTAGCCCGGTCAAgggccttaggccgattaaGGATGCGGGCCTCatata
cgggaagtataggccaaTCGAGCCCGTGACCCGGGTTCAAAagggggcaccccctgagag
TCCCGGCCGGGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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