The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0320
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1329907
End posion on genome 1329769
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
aagtaacgac
tRNA gene sequence 
CGGCCCGTAGCTCAGCGGTCCAGAGCGCCCGGCTGTAGACCGGGCGGTCCCGGGTTCAAA
TCCCGGCGGGCCGACCA
Downstream region at tRNA end position 
gtatctttgt
Secondary structure (Cloverleaf model)
>At0320	Tyr	GTA
                   c      ACCA gtatctttgt
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    G       C T C G       C C G G G     C
    G       | | | |                 T T
    T       G A G C
      C C A        G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C *
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CGGCCCGTAGCTCAGCGGTCCAGAGCGCCCGGCTGTAGACagcccctgggggtacaacag
ccacaagcccccaggacctgtaaCGGGCGGTCCCGGGTTCAAAagggatagacccctgag
acTCCCGGCGGGCCGACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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