The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0323
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1820891
End posion on genome 1820803
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
ttagaccaca
tRNA gene sequence 
GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGTCCCGGGTTCAAATC
CCGGCGGCCGCAttc
Downstream region at tRNA end position 
cctttttata
Secondary structure (Cloverleaf model)
>At0323	Phe	GAA
                   a      Attc cctttttata
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     C T C G       C C G G G     C
      G     | | | |                 T T
      G     G A G C
        G A        G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C *
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACagtcgcaagacctccaaCGGGC
GGTCCCGGGTTCAAATCCCGGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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