The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0324
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1821412
End posion on genome 1821305
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
gttgactaca
tRNA gene sequence 
GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCGGCCTTCCAAGCCGTTGATCCCGGGTTCG
AATCCCGGCCGCCGCAtgc
Downstream region at tRNA end position 
ccttattttc
Secondary structure (Cloverleaf model)
>At0324	Gly	TCC
                   a      Atgc ccttattttc
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T T A        G     TGATC
                    G + T
                    C - G
                   *G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCGagggagcaacccccacaaGCCTTCCAcg
ctcggcgaggagAGCCGTTGATCCCGGGTTCGAATCCCGGCCGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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