The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0326
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1893796
End posion on genome 1893686
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
aggtggcaag
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGTAGGATGCGCGGTTCGGGTCCGCGTGACCCCGGGTTCAAA
TCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
caccctactc
Secondary structure (Cloverleaf model)
>At0326	Pro	CGG
                   g      ACCA caccctactc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGACC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  T       T
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGTAGGATagggcacatccccctgaaGCGCGGTTCGGGTCCG
CGTGACCCCGGGagggagaccccgggaaTTCAAATCCCGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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