The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0333
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 543576
End posion on genome 543663
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
taggggtaga
tRNA gene sequence 
GCCGGGGTGGCCGAGTTGGTCCAAGGCGCGGGCCTGCTAAGCCCGTCCCCGTTCGGGGGC
GTGGGTTCAAATCCCACCCCCGGCGCCA
Downstream region at tRNA end position 
aacccgttta
Secondary structure (Cloverleaf model)
>At0333	Ser	GCT
                   a      GCCA aacccgttta
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    T T G A        G      | | | | |     A
  G         G C C G       G T G G G     C
  G           | | |                 T T
  T         A G G C
    C C A          G     TCCCCGTTCGGGGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGTTGGTCCAAGGCGCGGGCCTGCTAAGCCCGTCCCCGTTCGGGGGC
GTGGGTTCAAATCCCACCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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