The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0342
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 1395175
End posion on genome 1395291
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
aaagaaatga
tRNA gene sequence 
CGGCCCGTAGCTCAGCGGTCGAGAGCGCCCGGCTGTAGACCGGGCGGTCCCGGGTTCAAA
TCCCGGCGGGCCGAtag
Downstream region at tRNA end position 
ttctatatac
Secondary structure (Cloverleaf model)
>At0342	Tyr	GTA
                   a      Atag ttctatatac
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    G       C T C G       C C G G G     C
    G       | | | |                 T T
    T       G A G C
      C G A        G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C *
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CGGCCCGTAGCTCAGCGGTCGAGAGCGCCCGGCTGTAGACagcccctggggggacagcca
cagaaaaccccccaggcctataaCGGGCGGTCCCGGGTTCAAATCCCGGCGGGCCGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK