The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At0350 |
Genome ID | CP000504 |
Phylum/Class | Thermoproteota |
Species | Pyrobaculum islandicum DSM 4184 [CP000504] |
Start position on genome
|
118901
|
End posion on genome
|
118830
|
Amino Acid
|
Ala
|
Anticodon
|
CGC
|
Upstream region at tRNA start position
|
ttgcaaaaca
|
tRNA gene sequence
|
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTCGCGCGCGGGTGATCCCGGGTTCGAATC CCGGCCGGTCCActa
|
Downstream region at tRNA end position
|
attttaaaaa
|
Secondary structure (Cloverleaf model) | >At0350 Ala CGC
a Acta attttaaaaa
G - C
G - C
G + T
C - G
C - G
G - C
G - C T A
T G G C C C A
G A A | | | | | G
C T C T G C C G G G C
G + | | + T T
G G G A T
A A G TGATC
C - G
C - G
C - G
G - C
C - G
C C
T G
C G C
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTCGCGCGCGGGTGATCCCGGGTTCGAATC CCGGCCGGTCCA |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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