The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0359
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 459148
End posion on genome 459041
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
atgtcctaca
tRNA gene sequence 
GCGGCGGTAGTCTAGCCTGGTTAGGATGGCGGCCTGCCAAGCCGTTGATCCCGGGTTCAA
ATCCCGGCCGCCGCACCA
Downstream region at tRNA end position 
ttaatcttta
Secondary structure (Cloverleaf model)
>At0359	Gly	GCC
                   a      ACCA ttaatcttta
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T A          G     TGATC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTAGTCTAGCCTGGTTtggacggtgggggagccaccgccccggagtAGGATGGC
GGCCTGCCAAGCCGTTGATCCCGGGTTCAAATCCCGGCCGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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