The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0376
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 558427
End posion on genome 558514
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position
atgaattagc
tRNA gene sequence
GCGGGGGTGCCCGAGCATGGTCAAAGGGGTCGGGCTCAGGACCCGATGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Downstream region at tRNA end position
taataacaat
Secondary structure (Cloverleaf model)
>At0376	Leu	CAG
                   c      ACCA taataacaat
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    A C G A        G      | | | | |     A
  T         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCGTAGGCCTGC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCATGGTCAAAGGGGTCGGGCTCAGGACCCGATGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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