The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0378
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 563835
End posion on genome 563910
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
aggagaaaaa
tRNA gene sequence 
GGGCCCGTAGCCTAGCCCGGATCAGGGCGCCGGCCTTCGGAGCCGGAGACCCCGGGTTCA
AATCCCGGCGGGCCCGctg
Downstream region at tRNA end position 
tacagtattt
Secondary structure (Cloverleaf model)
>At0378	Arg	TCG
                   a      Gctg tacagtattt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T C C G       C C G G G     C
  G         + | | |                 T T
  G         G G G C
    A T C A        G     AGACC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCCTAGCCCGGATCAGGGCGCCGGCCTTCGGAGCCGGAGACCCCGGGTTCA
AATCCCGGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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