The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0379
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 624851
End posion on genome 624954
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
gtattgatat
tRNA gene sequence 
GCGGCGGTCGTCTAGCCTGGACTAGGACGCCGGCCTGCCACGCCGGAGATCCCGGGTTCA
AATCCCGGCCGCCGCACCA
Downstream region at tRNA end position 
attctaatct
Secondary structure (Cloverleaf model)
>At0379	Gly	GCC
                   t      ACCA attctaatct
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A C T A        G     AGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A *
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTCGTCTAGCCTGGACTAGGACGCCGGCCTGCCAtacgggttcgtataaccgtg
tagaaCGCCGGAGATCCCGGGTTCAAATCCCGGCCGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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