The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0419
Genome IDCP000575
Search identical group
Phylum/ClassThermoproteota
SpeciesStaphylothermus marinus F1 [CP000575]
Start position on genome 1415757
End posion on genome 1415658
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
attatggtgt
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGAAGAGCGCCGCCCTCGCAAGGCGGAGGTCCCGGGTTCAAA
TCCCGGCCGGTCCACCA
Downstream region at tRNA end position 
tctacataaa
Secondary structure (Cloverleaf model)
>At0419	Ala	CGC
                   t      ACCA tctacataaa
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G A A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A *
                    C G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGAAGAGCGCCGCCCTCGCAtataatgctaccgaggtcgggg
gAGGCGGAGGTCCCGGGTTCAAATCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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