The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0443
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 72657
End posion on genome 72570
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
agtacttatt
tRNA gene sequence 
GCCGGGGTCGCCTAGCTCGGTAGGGCGGAGGCCTGCTAAGCCTCTGGGGTCCCACCCCGC
GCGGGTTCAAATCCCGCCCCCGGCGCCA
Downstream region at tRNA end position 
tgaatattat
Secondary structure (Cloverleaf model)
>At0443	Ser	GCT
                   t      GCCA tgaatattat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        C      | | | | |     A
    T       T C C G       G C G G G     C
    C       + | | |                 T T
    G       G G G C
      G T A        G     TGGGGTCCCACCCCGC
                    G - C
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTCGCCTAGCTCGGTAGGGCGGAGGCCTGCTAAGCCTCTGGGGTCCCACCCCGC
GCGGGTTCAAATCCCGCCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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