The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0454
Genome IDCP000077
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius DSM 639 [CP000077]
Start position on genome 594546
End posion on genome 594472
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
tctaattatt
tRNA gene sequence 
GGGCCCGTAGTCTAGCCTGGTTAGGACGCTGCCCTCACACGGCAGAAGTCCCGAGTTCAA
ATCTCGGCGGGCCCAtgt
Downstream region at tRNA end position 
gggggacacc
Secondary structure (Cloverleaf model)
>At0454	Val	CAC
                   t      Atgt gggggacacc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C T C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G A G     C
  G         + | | |                 T T
  G         G G A C
    T T A          G     AAGTC
                    C - G
                    T - A
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCCTGGTTAGGACGCTGCCCTCACACGGCAGAAGTCCCGAGTTCAA
ATCTCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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