The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0479
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 639035
End posion on genome 639119
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position
ttatttaagt
tRNA gene sequence
GCGGGGGTGCCCGAGCTAGGTCGAAGGGGGTAGGCTCAGGCCCTACTGGTGAAGGCCTTC
GCGGGTTCAAATCCCGCCCCCCGCAgtg
Downstream region at tRNA end position
ataaaatttg
Secondary structure (Cloverleaf model)
>At0479	Leu	CAG
                   t      Agtg ataaaatttg
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    T C G A        G      | | | | |     A
  A         G C C C       G C G G G     C
  G           | | |                 T T
  G         A G G G
    T C G A        G     TGGTGAAGGCCTTC
                    G - C
                    T - A
                    A - T
                    G - C
                    G - C
                  C       C
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCTAGGTCGAAGGGGGTAGGCTCAGGCCCTACTGGTGAAGGCCTTC
GCGGGTTCAAATCCCGCCCCCCGCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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