The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0504
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 595458
End posion on genome 595385
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
ttattattat
tRNA gene sequence 
GCCGCCGTAGCTCAGCCCGGGAGAGCGCCCGGCTGAAGACCGGGTTGTCCGGGGTTCAAG
TCCCCGCGGCGGCActg
Downstream region at tRNA end position 
tggggtatcc
Secondary structure (Cloverleaf model)
>At0504	Phe	GAA
                   t      Actg tggggtatcc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C G G G G     C
    C       | | | |                 T T
    G       G A G C
      G G A        G     TTGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCCGGGAGAGCGCCCGGCTGAAGACCGGGTTGTCCGGGGTTCAAG
TCCCCGCGGCGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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