The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0505
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 641038
End posion on genome 640931
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
atatttaatt
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGTCAAGGGGGTAGGCTCGAGACCTACTGCCTCTCTGAGGCACA
CGGGTTCGAATCCCGTCCCCGGCGtat
Downstream region at tRNA end position 
atcaattcct
Secondary structure (Cloverleaf model)
>At0505	Ser	CGA
                   t      Gtat atcaattcct
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C C C     A
      C G A        G      | | | | |     G
    G       G C C C       A C G G G     C
    G         | | |                 T T
    T       A G G G
      C A          G     TGCCTCTCTGAGGCAC
                    G - C
                    T - A
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G *
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGCCCGAGCGGTCAAGGGGGTAGGCTCGAGacctttccagcgttactgcgagg
gACCTACTGCCTCTCTGAGGCACACGGGTTCGAATCCCGTCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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