The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0508
Genome IDAE006641
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus P2 [AE006641]
Start position on genome 733011
End posion on genome 732937
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
tatcataagg
tRNA gene sequence 
GGACCCGTAGCTCAGCTAGGATGGAGCGCCGGCCTTCGGAGCCGGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCGttg
Downstream region at tRNA end position 
tgggggatat
Secondary structure (Cloverleaf model)
>At0508	Arg	TCG
                   g      Gttg tgggggatat
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    T C G A        A      | | | | |     A
  A         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    A T G          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTCAGCTAGGATGGAGCGCCGGCCTTCGGAGCCGGTGGTCCCGGGTTCAA
ATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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