The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0520
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 361250
End posion on genome 361342
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
tgatggtagt
tRNA gene sequence 
CCCGCCGTAGCTCAGCCCGGTGGAGCGCCCGGCTGTAGACCGGGTGGTCCGGGGTTCAAG
TCCCCGCGGCGGGActt
Downstream region at tRNA end position 
tatttttgtt
Secondary structure (Cloverleaf model)
>At0520	Tyr	GTA
                   t      Actt tatttttgtt
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C G G G G     C
    C       | | | |                 T T
    G       G A G C
      G T G        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCGTAGCTCAGCCCGGTGGAGCGCCCGGCTGTAGggaaggagggcacgcggtgACC
GGGTGGTCCGGGGTTCAAGTCCCCGCGGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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