The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0522
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 367158
End posion on genome 367258
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
aataagagaa
tRNA gene sequence 
GCGGGGGTGCCCGAGCAAGGTCAAAGGGGTCGGGCTCAGGCCCCGATGGCATAGGCCTGC
GTGGGTTCAAGTCCCACCCCCCGCAttt
Downstream region at tRNA end position 
attaatagtt
Secondary structure (Cloverleaf model)
>At0522	Leu	CAG
                   a      Attt attaatagtt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     C A C C C     A
    A C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCATAGGCCTGC
                    T - A
                    C - G
                    G - C
                    G - C
                    G - C
                  C       C
                  T       G *
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCAAGGTCAAAGGGGTCGGGCTCAGGacaagatatgtgggatCCCC
GATGGCATAGGCCTGCGTGGGTTCAAGTCCCACCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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