The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0533
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 1719268
End posion on genome 1719343
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
tatccttagt
tRNA gene sequence 
GCGGCCGTAGTCTAGCCTGGATTAGGACGCCGGCCTGCCACGCCGGAGGTCCCGGGTTCA
AATCCCGGCGGTCGCActg
Downstream region at tRNA end position 
tggggggtcc
Secondary structure (Cloverleaf model)
>At0533	Gly	GCC
                   t      Actg tggggggtcc
                     G - C
                     C - G
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A T T A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTAGTCTAGCCTGGATTAGGACGCCGGCCTGCCACGCCGGAGGTCCCGGGTTCA
AATCCCGGCGGTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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