The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0536
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 2190884
End posion on genome 2190959
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
aaatatttat
tRNA gene sequence 
GGGCCCGTGGTCTAGCCTGGACTAGGACGCAGCGCTCGGGCCGCTGTGGTCCCGGGTTCA
AATCCCGGCGGGCCCAtgg
Downstream region at tRNA end position 
gccggtagct
Secondary structure (Cloverleaf model)
>At0536	Pro	CGG
                   t      Atgg gccggtagct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A C T A        G     TGGTC
                    C - G
                    A - T
                    G - C
                    C - G
                    G - C
                  C       C
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGTCTAGCCTGGACTAGGACGCAGCGCTCGGGCCGCTGTGGTCCCGGGTTCA
AATCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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