The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0538
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 2204279
End posion on genome 2204354
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
attatatagt
tRNA gene sequence 
GCGGCCGTCGTCTAGTCTGGATTAGGACGCTGGCCTTCCAAGCCAGTAATCCCGGGTTCA
AATCCCGGCGGCCGCActt
Downstream region at tRNA end position 
tagtgttact
Secondary structure (Cloverleaf model)
>At0538	Gly	TCC
                   t      Actt tagtgttact
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C T G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A T T A        G     TAATC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTCGTCTAGTCTGGATTAGGACGCTGGCCTTCCAAGCCAGTAATCCCGGGTTCA
AATCCCGGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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