The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0547
Genome IDBA000023
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfurisphaera tokodaii str. 7 [BA000023]
Start position on genome 306779
End posion on genome 306682
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
attataatat
tRNA gene sequence 
GCCGCCGTAGCTCAGTCTGGTAGAGCGCCGGCCTCGTAAGCCGGTGGTCCGGGGTTCAAG
TCCCCGCGGCGGCTctg
Downstream region at tRNA end position 
tgattactat
Secondary structure (Cloverleaf model)
>At0547	Thr	CGT
                   t      Tctg tgattactat
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
      T G A        A      | | | | |     A
    C       C T C G       C G G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGTCTGGTAGAGCGCCGGCCTCGTAaggttcctaagaaggatccaag
aaAGCCGGTGGTCCGGGGTTCAAGTCCCCGCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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