The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0568
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 420870
End posion on genome 421000
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
atctttctag
tRNA gene sequence 
GCCGGGGTGGCCGAGAGGTCAAGGCGTCGGGCTGCAGACCCGATATTTCCCGGGTTCGAG
TCCCGGCCCCGGCTCCA
Downstream region at tRNA end position 
gctatatgct
Secondary structure (Cloverleaf model)
>At0568	Cys	GCA
                   g      TCCA gctatatgct
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T G
                    T     G G C C C     A
      A G A        G      | | | | |     G
    G       G C C G       C C G G G     C
    G         | | |                 T T
    T       A G G C
      C A          G     TATTTC
                    T - A
                    C - G
                    G - C
                   *G - C
                    G - C
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGAGGTCAAGGCGTCGGttccactcgtgaggtgtggaggcgagGCTG
CAGtggctagagaaatttaccagccctggtaACCCGATATTTCCCGGGTTCGAGTCCCGG
CCCCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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