The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0574
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 536194
End posion on genome 536296
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
ggtagaggag
tRNA gene sequence 
GCCTCGGTGGTGTAGCCTGGGAACACGTCGGCCTGTGGAGCCGAAGACCCCGGGTTCAAA
TCCCGGCCGAGGCCCCA
Downstream region at tRNA end position 
aatccttgtt
Secondary structure (Cloverleaf model)
>At0574	His	GTG
                   g      CCCA aatccttgtt
                     G - C
                     C - G
                     C - G
                     T - A
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    C       T G T G       C C G G G     C
    T       | | | |                 T T
    G       A C A C
      G G A        G     AGACC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTCGGTGGTGTAGCCTGGGAACACGTCGGCCTGTGGAGCCGAAGaggcgccgtgagcg
gcgcgcgcggaaACCCCGGGTTCAAATCCCGGCCGAGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK