The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0585
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 892743
End posion on genome 892941
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
cggggaccag
tRNA gene sequence 
CCCCGCGTAGCTCAGCGGTAGAGCATCCGGCTGTAGACCGGAGGGCCCCCGGTTCGAATG
GCGGGCGGAGGGTg
Downstream region at tRNA end position 
ccgctaggaa
Secondary structure (Cloverleaf model)
>At0585	Tyr	GTA
                   g      GGTg ccgctaggaa
                     C - G
                     C   A
                     C - G
                     C - G
                     G - C
                     C - G
                     G   G          A A
                    T     G C G G T     G
        G A        A      |   | | +     C
      C     C T C G       C C C C G     T
      G     | | | |                 G T
      G     G A G C
        T A        A     GGGC
                    T - A
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCCGCGTAGCTCAGCGGTAGAGCATCCGGCTGTAGgctatgccacgcggcgaccgcccg
gcgtagaccgggggatgaagccgcggcagccggagACCGGAGGGCCCCCGGTTCGAATGG
CGGGCGGccgtttcgctttcctcccttctcgccgctctcccaaggtgatcgttacaaaca
gcgcggtggcggttAGGGT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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