The detailed information of tRNA gene sequence


Sequence ID>WENV170379096
Genome IDCETV01088949
Search identical group
Phylum/Class[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
Species
Start position on genome 1062
End posion on genome 1158
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
attgattttt
tRNA gene sequence 
GGGAATGATTGAATAGCTGGTGCTTTCCACGGCCTTCAAAGCCGATGTCTCAAATGTGAT
TTTGAGAGCTGGGTTCGATTCCCAGGCGTTCCCGCCA
Downstream region at tRNA end position 
tttcaaaaag
Secondary structure (Cloverleaf model)
>WENV170379096	SeC	TCA
                   t      GCCA tttcaaaaag
                     G - C
                     G - C
                     G - C
                     A - T
                     A - T
                     T + G
                     G - C
                     A   G          T T
                    T     G A C C C     A
      C G A        T      | | | | |     G
    T       T A A G       C T G G G     C
    G         | | |                 T T
    G       T T T C
      T G C        C     TGTCTCAAATGTGATTTTGAGAG
                    A   A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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