The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0643
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 1766013
End posion on genome 1765918
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
agctatcgaa
tRNA gene sequence 
CCCGCCTTAGCTCAGAGGTAGAGCGTGGGACTGTAGATCCCATGGTCCCCGGTTCAAATC
CGGGAGGCGGGActt
Downstream region at tRNA end position 
gaatgctttg
Secondary structure (Cloverleaf model)
>At0643	Tyr	GTA
                   a      Actt gaatgctttg
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T A
                    T     G G G C C     A
        G A        A      | | | | |     A
      A     C T C G       C C C G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     TGGTC
                    T - A
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCCTTAGCTCAGAGGTAGAGCGTGGGACTGTAGtccgccactccgcggcaggcggag
ATCCCATGGTCCCCGGTTCAAATCCGGGAGGCGGGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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