The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0674
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 221399
End posion on genome 221329
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
agagcgcagt
tRNA gene sequence 
GCATCGATGGTCTAGAGGTATGACTTAGGCCTTCCAAGCCTATAGCCCGGGTTCGATTCC
CGGTCGATGCAtgc
Downstream region at tRNA end position 
gggctcgtgg
Secondary structure (Cloverleaf model)
>At0674	Gly	TCC
                   t      Atgc gggctcgtgg
                     G - C
                     C - G
                     A - T
                     T - A
                     C - G
                     G - C
                     A - T          T T
                    T     G G C C C     A
        G A        G      | | | | |     G
      A     T C T G       C C G G G     C
      G       | | |                 T T
      G     T G A C
        T A        T     TAGC
                    T - A
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCATCGATGGTCTAGAGGTATGACTTAGGCCTTCCAAGCCTATAGCCCGGGTTCGATTCC
CGGTCGATGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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