The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0694
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2136953
End posion on genome 2136882
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
gaggcagtgc
tRNA gene sequence 
GCCGCCGTGGCTTAGCGGCATAGCGGCTGATTCGTAATCAGCAGGTCGAGGGTTCAAGTC
CCTCCGGCGGCTtct
Downstream region at tRNA end position 
tttgcgcagg
Secondary structure (Cloverleaf model)
>At0694	Thr	CGT
                   c      Ttct tttgcgcagg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T G
                    T     C T C C C     A
        G A        G      | | | | |     A
      C     T T C G       G A G G G     C
      G       | | |                 T T
      G     T A G C
        C A        G     AGGTC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  T       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTGGCTTAGCGGCATAGCGGCTGATTCGTAATCAGCAGGTCGAGGGTTCAAGTC
CCTCCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK