The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0695
Genome IDCP000780
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoregula boonei 6A8 [CP000780]
Start position on genome 2234203
End posion on genome 2234130
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
gaccttatgc
tRNA gene sequence 
GGGCTCGTGGTCTAGTTGGCTATGACGTCGCCTTGACATGGCGGAGGTCCTGAGTTCGAA
TCTCAGCGGGCCCAtct
Downstream region at tRNA end position 
ctgtattctg
Secondary structure (Cloverleaf model)
>At0695	Val	GAC
                   c      Atct ctgtattctg
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G A C T C     A
      T G A        G      | | | | |     G
    T       T C T G       C T G A G     C
    G         | | |                 T T
    G       T G A C
      C T A        G     AGGTC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       T
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTGGTCTAGTTGGCTATGACGTCGCCTTGACATGGCGGAGGTCCTGAGTTCGAA
TCTCAGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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